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PLOS Computational Biology / Public Library of Science

Citation Profile [Updated: 2025-04-15 08:32:09]
5 Years H Index
21
Impact Factor (IF)
0.04
5 Years IF
0.12
Data available in this report

[Raw data] [50 most cited papers] [50 most relevant papers] [cites used to compute IF] [Recent citations ][Frequent citing series ] [more data in EconPapers] [trace new citations] [Missing citations? Add them now] [Incorrect content? Let us know]

Main indicators
Raw Data

 

IF AIF CIF IF5 DOC CDO CIT NCI CCU D2Y C2Y D5Y C5Y SC %SC CiY II AII
2005 0 0.51 0 0 22 22 45 1 0 0 0 0 0.23
2006 0.23 0.5 0.1 0.23 61 83 223 8 9 22 5 22 5 8 100 3 0.05 0.23
2007 0.18 0.46 0.16 0.18 92 175 251 28 37 83 15 83 15 25 89.3 3 0.03 0.2
2008 0.2 0.49 0.14 0.18 122 297 292 41 78 153 30 175 32 25 61 5 0.04 0.23
2009 0.15 0.48 0.14 0.14 159 456 357 64 142 214 33 297 43 46 71.9 6 0.04 0.24
2010 0.21 0.48 0.17 0.17 177 633 564 108 250 281 58 456 79 68 63 5 0.03 0.21
2011 0.18 0.52 0.19 0.19 189 822 438 160 410 336 60 611 116 68 42.5 11 0.06 0.24
2012 0.22 0.52 0.21 0.21 215 1037 299 218 628 366 81 739 152 101 46.3 15 0.07 0.22
2013 0.19 0.56 0.21 0.21 252 1289 407 275 903 404 77 862 184 119 43.3 8 0.03 0.24
2014 0.13 0.55 0.18 0.17 292 1581 432 281 1184 467 61 992 170 161 57.3 10 0.03 0.23
2015 0.14 0.55 0.15 0.14 304 1885 534 279 1463 544 77 1125 156 151 54.1 6 0.02 0.23
2016 0.12 0.52 0.14 0.11 288 2173 338 297 1760 596 72 1252 139 177 59.6 10 0.03 0.21
2017 0.13 0.54 0.15 0.12 326 2499 360 367 2127 592 78 1351 161 223 60.8 8 0.02 0.21
2018 0.1 0.55 0.12 0.11 297 2796 225 323 2450 614 64 1462 162 141 43.7 7 0.02 0.23
2019 0.12 0.56 0.14 0.12 374 3170 185 428 2878 623 72 1507 180 256 59.8 8 0.02 0.22
2020 0.1 0.68 0.13 0.12 400 3570 218 479 3357 671 67 1589 183 225 47 18 0.05 0.32
2021 0.1 0.8 0.12 0.1 364 3934 198 453 3810 774 77 1685 174 107 23.6 15 0.04 0.29
2022 0.12 0.83 0.14 0.13 92 4026 12 574 4384 764 95 1761 222 17 3 3 0.03 0.25
IF: Two years Impact Factor: C2Y / D2Y
AIF: Average Impact Factor for all series in RePEc in year y
CIF: Cumulative impact factor
IF5: Five years Impact Factor: C5Y / D5Y
DOC: Number of documents published in year y
CDO: Cumulative number of documents published until year y
CIT: Number of citations to papers published in year y
NCI: Number of citations in year y
CCU: Cumulative number of citations to papers published until year y
D2Y: Number of articles published in y-1 plus y-2
C2Y: Cites in y to articles published in y-1 plus y-2
D5Y: Number of articles published in y-1 until y-5
C5Y: Cites in y to articles published in y-1 until y-5
SC: selft citations in y to articles published in y-1 plus y-2
%SC: Percentage of selft citations in y to articles published in y-1 plus y-2
CiY: Cites in year y to documents published in year y
II: Immediacy Index: CiY / Documents.
AII: Average Immediacy Index for series in RePEc in year y
50 most cited documents in this series
#YearTitleCited
12010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

95
22013Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

91
32006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

86
42015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

74
52010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

63
62010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

Full description at Econpapers || Download paper

56
72018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

52
82007Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Sethna, James P ; Myers, Christopher R ; Brown, Kevin S ; Casey, Fergal P ; Waterfall, Joshua J ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189.

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50
92017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

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49
102012Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

35
112021Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

Full description at Econpapers || Download Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

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31
132015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

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31
142020Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download Broadband Criticality of Human Brain Network Synchronization. (2009). Bullmore, ED ; Christensen, Soren R ; Smith, Marie L ; Kitzbichler, Manfred G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000314.

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28
162014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

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26
172014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

Full description at Econpapers || Download paper

25
182009Semantic Similarity in Biomedical Ontologies. (2009). Couto, Francisco M ; Lord, Phillip ; Falco, Andre O ; Faria, Daniel ; Pesquita, Catia. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000443.

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25
192011Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076.

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25
202014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

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23
212011Accelerated Profile HMM Searches. (2011). Eddy, Sean R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002195.

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23
222010Associating Genes and Protein Complexes with Disease via Network Propagation. (2010). Sharan, Roded ; Shlomi, Tomer ; Ruppin, Eytan ; Magger, Oded ; Vanunu, Oron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000641.

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21
232017Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

Full description at Econpapers || Download paper

21
242014Evolutionary Game Dynamics in Populations with Heterogenous Structures. (2014). Hauert, Christoph ; Fu, Feng ; Maciejewski, Wes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003567.

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21
252016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

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21
262011How Structure Determines Correlations in Neuronal Networks. (2011). Rotter, Stefan ; Cardanobile, Stefano ; Staude, Benjamin ; Pernice, Volker. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002059.

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20
272015VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Zvyagin, Ivan V ; Nazarov, Vadim I ; Pogorelyy, Mikhail V ; Putintseva, Ekaterina V ; Britanova, Olga V ; Bolotin, Dmitriy A ; Turchaninova, Maria A ; Chudakov, Dmitriy M ; Bagaev, Dmitriy V ; Skorobogatova, Elena V ; Shugay, Mikhail ; Kirgizov, Kirill I ; Kirgizova, Vitalina I. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503.

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20
282016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

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20
292009Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352.

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20
302010A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Winn, John ; Durbin, Richard ; Parts, Leopold ; Stegle, Oliver. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770.

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20
312008Hierarchical Models in the Brain. (2008). Friston, Karl. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000211.

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19
322007Machine Learning and Its Applications to Biology. (2007). Drghici, Sorin ; Romero, Roberto ; Chen, Xue-Wen ; Carey, Vincent J ; Tarca, Adi L. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030116.

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19
332010Comparing Families of Dynamic Causal Models. (2010). Leff, Alex P ; Schofield, Thomas M ; Friston, Karl J ; Rosa, Maria J ; Daunizeau, Jean ; Stephan, Klaas E ; Penny, Will D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000709.

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19
342006Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems. (2006). Hilgetag, Claus C ; Kaiser, Marcus . In: PLOS Computational Biology. RePEc:plo:pcbi00:0020095.

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18
352009Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation. (2009). Pinheiro, Flávio ; Santos, Francisco C ; Pacheco, Jorge M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000596.

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18
362017mixOmics: An R package for ‘omics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Singh, Amrit ; Gautier, Benoit ; Rohart, Florian . In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752.

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18
372008Support Vector Machines and Kernels for Computational Biology. (2008). Ratsch, Gunnar ; Scholkopf, Bernhard ; Sonnenburg, Soren ; Ong, Cheng Soon ; Ben-Hur, Asa. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000173.

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17
382014Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics. (2014). Shaman, Jeffrey ; Karspeck, Alicia ; Yang, Wan. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003583.

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17
392011Risk, Unexpected Uncertainty, and Estimation Uncertainty: Bayesian Learning in Unstable Settings. (2011). Bossaerts, Peter ; Payzan-Lenestour, Elise. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001048.

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16
402015The Effect of Incentives and Meta-incentives on the Evolution of Cooperation. (2015). Sasaki, Tatsuya ; Toriumi, Fujio ; Yamamoto, Hitoshi ; Okada, Isamu. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004232.

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16
412020Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices. (2020). Keeling, Matt J ; Hilton, Joe. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008031.

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16
422010Probability Matching as a Computational Strategy Used in Perception. (2010). Shams, Ladan ; Beierholm, Ulrik R ; Wozny, David R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000871.

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16
432014On the Origins of Suboptimality in Human Probabilistic Inference. (2014). Wolpert, Daniel M ; Vijayakumar, Sethu ; Acerbi, Luigi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003661.

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16
442005Ten Simple Rules for Getting Published. (2005). Bourne, Philip E. In: PLOS Computational Biology. RePEc:plo:pcbi00:0010057.

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16
452012Traffic Instabilities in Self-Organized Pedestrian Crowds. (2012). Degond, Pierre ; Appert-Rolland, Cecile ; Pettre, Julien ; Lemercier, Samuel ; Chabiron, Olivier ; Fehrenbach, Jerome ; Moreau, Mathieu ; Guillot, Elsa G ; Moussaid, Mehdi ; Theraulaz, Guy. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002442.

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15
462011Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109.

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15
472010Parameter Estimation and Model Selection in Computational Biology. (2010). Khammash, Mustafa ; Lillacci, Gabriele. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000696.

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15
482018Prediction of infectious disease epidemics via weighted density ensembles. (2018). Reich, Nicholas G ; Ray, Evan L. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005910.

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15
492016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

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15
502015Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349.

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15
50 most relevant documents in this series (papers most cited in the last two years)
#YearTitleCited
12013Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

70
22015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

54
32017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

Full description at Econpapers || Download paper

38
42010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

30
52021Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

Full description at Econpapers || Download Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

20
72010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

16
82006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

15
92015VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Zvyagin, Ivan V ; Nazarov, Vadim I ; Pogorelyy, Mikhail V ; Putintseva, Ekaterina V ; Britanova, Olga V ; Bolotin, Dmitriy A ; Turchaninova, Maria A ; Chudakov, Dmitriy M ; Bagaev, Dmitriy V ; Skorobogatova, Elena V ; Shugay, Mikhail ; Kirgizov, Kirill I ; Kirgizova, Vitalina I. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503.

Full description at Econpapers || Download paper

15
102017mixOmics: An R package for ‘omics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Singh, Amrit ; Gautier, Benoit ; Rohart, Florian . In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752.

Full description at Econpapers || Download paper

14
112016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

Full description at Econpapers || Download paper

13
122017Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

Full description at Econpapers || Download paper

12
132012Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

11
142020Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download Mindboggling morphometry of human brains. (2017). Reuter, Martin ; Rossa, Brian ; Lee, Noah ; Stavsky, Eliezer ; Hame, Yrjo ; Giard, Joachim ; Bao, Forrest S ; Ghosh, Satrajit S ; Klein, Arno ; Keshavan, Anisha ; Neto, Elias Chaibub. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005350.

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10
162021Evaluating epidemic forecasts in an interval format. (2021). Reich, Nicholas G ; Gneiting, Tilmann ; Ray, Evan L ; Bracher, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008618.

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10
172014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

Full description at Econpapers || Download paper

9
182010A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Winn, John ; Durbin, Richard ; Parts, Leopold ; Stegle, Oliver. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770.

Full description at Econpapers || Download paper

9
192015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

9
202016Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline. (2016). Chan-Lau, Jorge ; Chen, Jin Miao ; Poidinger, Michael ; Newell, Evan W ; Wong, Michael Thomas. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005112.

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8
212013Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

Full description at Econpapers || Download paper

8
222010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

Full description at Econpapers || Download paper

8
232016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

Full description at Econpapers || Download paper

7
242014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

Full description at Econpapers || Download paper

7
252021MAUI (MBI Analysis User Interface)—An image processing pipeline for Multiplexed Mass Based Imaging. (2021). Keren, Leeat ; Angelo, Michael ; Mrdjen, Dunja ; Oliveria, John-Paul ; Greenbaum, Shirley ; Milo, Idan ; Baranski, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008887.

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6
262016Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights. (2016). Segata, Nicola ; Waldron, Levi ; Malik, Faizan ; Truong, Duy Tin ; Pasolli, Edoardo. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004977.

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272021Generating functional protein variants with variational autoencoders. (2021). Bikard, David ; Chen, Arthur ; Couairon, Guillaume ; Baur, Sebastien ; Depardieu, Florence ; Hawkins-Hooker, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008736.

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282016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

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292020Systems biology informed deep learning for inferring parameters and hidden dynamics. (2020). Em, George ; Raissi, Maziar ; Lu, LU ; Yazdani, Alireza . In: PLOS Computational Biology. RePEc:plo:pcbi00:1007575.

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302018Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. (2018). Stone, Jasmine ; Mineault, Patrick ; Ringach, Dario ; Turaga, Srinivas C ; Bethge, Matthias ; Machado, Timothy A ; Macke, Jakob H ; Tolias, Andreas S ; Bolte, Ben ; Speiser, Artur ; Theis, Lucas ; Harris, Kenneth D ; McColgan, Thomas ; Roson, Miroslav Roman ; Pachitariu, Marius ; Chenkov, Nikolay ; Euler, Thomas ; Paninski, Liam ; Deneux, Thomas ; Froudarakis, Emmanouil ; Friedrich, Johannes ; Freeman, Jeremy ; Reimer, Jacob ; Berens, Philipp ; Sofroniew, Nicolas J ; Gerhard, Stephan ; Rogerson, Luke E ; Rupprecht, Peter. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006157.

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312013Consistent Estimation of Gibbs Energy Using Component Contributions. (2013). , Ronan ; Milo, Ron ; Haraldsdottir, Hulda S ; Noor, Elad. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003098.

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322015Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349.

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332014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

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342007Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Sethna, James P ; Myers, Christopher R ; Brown, Kevin S ; Casey, Fergal P ; Waterfall, Joshua J ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189.

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352020Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices. (2020). Keeling, Matt J ; Hilton, Joe. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008031.

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362019Evolutionary multiplayer games on graphs with edge diversity. (2019). Wang, Long ; Zhou, Lei ; Su, QI. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006947.

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372014Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features. (2014). Beer, Michael A ; Mohammad-Noori, Morteza ; Lee, Dongwon ; Ghandi, Mahmoud. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003711.

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382012Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. (2012). Wheelan, Sarah J ; Makeev, Vsevolod J ; Mironov, Andrey A ; Medvedeva, Yulia ; Cope, Leslie M ; Mularoni, Loris ; Favorov, Alexander. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002529.

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392015The Effect of Incentives and Meta-incentives on the Evolution of Cooperation. (2015). Sasaki, Tatsuya ; Toriumi, Fujio ; Yamamoto, Hitoshi ; Okada, Isamu. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004232.

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402014Classical Mathematical Models for Description and Prediction of Experimental Tumor Growth. (2014). Hahnfeldt, Philip ; Hlatky, Lynn ; John , ; Tracz, Amanda ; Beheshti, Afshin ; Lamont, Clare ; Benzekry, Sebastien. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003800.

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412011Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076.

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422019Hierarchical Bayesian inference for concurrent model fitting and comparison for group studies. (2019). Daw, Nathaniel D ; Frank, Michael J ; Heskes, Tom ; Dezfouli, Amir ; Piray, Payam. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007043.

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432021Optimal timing of one-shot interventions for epidemic control. (2021). Miller, Joel C ; Kiss, Istvan Z ; di Lauro, Francesco. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008763.

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442009Broadband Criticality of Human Brain Network Synchronization. (2009). Bullmore, ED ; Christensen, Soren R ; Smith, Marie L ; Kitzbichler, Manfred G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000314.

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452017ROTS: An R package for reproducibility-optimized statistical testing. (2017). Elo, Laura L ; Faux, Thomas ; Jaakkola, Maria K ; Seyednasrollah, Fatemeh ; Suomi, Tomi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005562.

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462021Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. (2021). , Justin ; Rogers, Simon ; Diblen, Faruk ; Spaaks, Jurriaan H ; Verhoeven, Stefan ; Ridder, Lars ; Huber, Florian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008724.

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472011Is My Network Module Preserved and Reproducible?. (2011). Horvath, Steve ; Oldham, Michael C ; Luo, Rui ; Langfelder, Peter. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001057.

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482014Evolution of All-or-None Strategies in Repeated Public Goods Dilemmas. (2014). Pinheiro, Flávio ; Pacheco, Jorge M ; Santos, Francisco C ; Vasconcelos, Vitor V. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003945.

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492011The What and Where of Adding Channel Noise to the Hodgkin-Huxley Equations. (2011). Shea-Brown, Eric ; Goldwyn, Joshua H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002247.

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502015Maximizing Sensory Dynamic Range by Tuning the Cortical State to Criticality. (2015). Shew, Woodrow L ; Grady, Stephen K ; McClanahan, Kylie ; Hoang, Thanh T ; Gautam, Shree Hari. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004576.

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Citing documents used to compute impact factor: 4
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2024Automated in vivo enzyme engineering accelerates biocatalyst optimization. (2024). Noack, Stephan ; von Borzyskowski, Lennart Schada ; Orsi, Enrico ; Lindner, Steffen N ; Nikel, Pablo I. In: Nature Communications. RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-46574-4.

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2022Spatial dynamics of a fractional predator-prey system with time delay and Allee effect. (2022). Ouyang, Miao ; Liu, Shutang ; Bi, Zhimin. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:162:y:2022:i:c:s0960077922006440.

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2022Tracking changes in SARS-CoV-2 transmission with a novel outpatient sentinel surveillance system in Chicago, USA. (2022). Pacilli, Massimo ; Ghinai, Isaac ; Cobey, Sarah ; Lightner, Shannon ; Gerardin, Jaline ; Holden, Tobias M ; Arevalo, Philip ; Jorgensen, Emile ; Richardson, Reese ; Gostic, Katelyn M. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33317-6.

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2021Modeling and forecasting the COVID?19 pandemic time?series data. (2021). Hendry, David ; Castle, Jennifer ; Doornik, Jurgen A. In: Social Science Quarterly. RePEc:bla:socsci:v:102:y:2021:i:5:p:2070-2087.

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2021Media discourses about a superspreader destination: How mismanagement of Covid-19 triggers debates about sustainability and geopolitics. (2021). Peters, Mike ; Pikkemaat, Birgit ; Bichler, Bernhard Fabian ; Mayer, Marius. In: Annals of Tourism Research. RePEc:eee:anture:v:91:y:2021:i:c:s0160738321001560.

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2021Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. (2021). Agweyu, A ; Bottomley, C ; I. M. O. Adetifa, ; Nyagwange, J ; Karanja, H ; Gitonga, J ; Mugo, D ; Etyang, A O ; Kagucia, E W ; J. A. G. Scott, ; Gallagher, K ; Warimwe, G M ; Uyoga, S ; Nokes, D J ; Otiende, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26452-z.

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2021The generative capacity of probabilistic protein sequence models. (2021). McGee, Francisco ; Haldane, Allan ; Carnevale, Vincenzo ; Levy, Ronald M ; Vucetic, Slobodan ; Novinger, Quentin ; Hauri, Sandro. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26529-9.

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2021scCODA is a Bayesian model for compositional single-cell data analysis. (2021). Schubert, B ; Theis, F J ; Muller, C L ; Ostner, J ; Buttner, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27150-6.

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2021Perceptions of risk for COVID-19 among individuals with chronic diseases and stakeholders in Central Appalachia. (2021). Awasthi, Manul ; Stewart, David W ; Dowling-McClay, Karilynn ; Weierbach, Florence M ; Mamudu, Hadii M ; Ahuja, Manik ; Paul, Timir K. In: Palgrave Communications. RePEc:pal:palcom:v:8:y:2021:i:1:d:10.1057_s41599-021-00906-7.

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2021Cluster size distribution of cells disseminating from a primary tumor. (2021). Levine, Herbert ; Mukherjee, Mrinmoy. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009011.

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2021Novelty is not surprise: Human exploratory and adaptive behavior in sequential decision-making. (2021). Herzog, Michael H ; Gerstner, Wulfram ; Lehmann, Marco P ; Modirshanechi, Alireza ; Xu, He A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009070.

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2021Phenotypic-dependent variability and the emergence of tolerance in bacterial populations. (2021). Muoz, Miguel A ; Sireci, Matteo ; Mateu, Jose Camacho. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009417.

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2021The role of competition versus cooperation in microbial community coalescence. (2021). Pawar, Samraat ; Smith, Thomas P ; Cook, Jacob ; Clegg, Tom ; Lechon-Alonso, Pablo. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009584.

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2021Strategie di governo e strutture egemoniche in tempo di pandemia. (2021). Bellanca, Nicolo', . In: MPRA Paper. RePEc:pra:mprapa:111234.

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